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Cambridge Cheminformatics Newsletter, 5 February 2026

Dear All,

I would like to circulate some current Cheminformatics- (and related) news to everyone as follows – in particular, our next Cambridge Cheminformatics Meeting will take place on 18 February (with a Co-Folding Special!), as usual in hybrid mode at the CCDC and on Zoom, for details please see below.

So here we go…

Events

10-12 February 2026
Applied ML Days
Lausanne, Switzerland
https://2026.appliedmldays.org

18 February 2026
Cambridge Cheminformatics Meeting – Co-Folding Special!
Cambridge Crystallographic Data Centre, Cambridge, UK and Online (Hybrid Mode)

Zoom participation(link will be live at event start, just join a few minutes beforehand):

https://cam-ac-uk.zoom.us/j/87555688864?pwd=bHhBnEbt1bCnl1BDPRnWYX4Qay621M.1

More Information about meeting series: https://c-inf.net

Programme

Beyond Public Data: Federated and Locally Fine-Tuned Co-Folding Models for Protein–Ligand Complexes
Robin Roehm, Apheris

Observations on Using Boltz2 Co-Folding for Drug Design
Henriette Willems, ALBORADA Research Institute

SureChEMBL 2.0: Now With Added Disease and Protein Annotations
Nicolas Bosc, EBI

Also note our future dates in 2026: 22 April, 2 September, 11 November

17 March 2026
Discngine Labs Live: Navigating Developability Challenges Across Antibody Modalities
Basel, Switzerland and Online (Hybrid Mode)
https://www.discngine.com/discngine-labs-live-in-basel

21 April 2026
UK-QSAR 2026
Edinburgh, UK
https://www.biosolveit.de/2025/12/08/save-the-date-uk-qsar-2026-in-edinburgh-on-21-april-2026

27/28 April 2026
SDDS 2026: Stanford Drug Discovery Symposium
Stanford University, CA and Online (Hybrid Mode)
https://med.stanford.edu/cvi/events/sdds2026-stanford-drug-discovery-symposium.html

30 April 2026
1st UAE Drug Discovery, Biotechnology & Beyond Symposium
Abu Dhabi, UAE
https://genetic.ae/2025/12/15/1st-uae-drug-discovery-biotechnology-symposium-from-science-to-translation

10/11 June 2026
2nd ChEMBL User Group Meeting
Hinxton, UK and Virtual (Hybrid Mode)
https://www.ebi.ac.uk/about/events/events/public-event/2026/ebi-9

27 September – 1 October 2026
25th EuroQSAR Symposium
Perugia, Italy
http://euroqsar.org

Vacancies

Scientist, Computational Medicinal Chemistry
Monte Rosa Therapeutics
Basel, Switzerland
https://www.linkedin.com/jobs/view/4344094353

Scientist Computational Chemistry
Nuvisan
Berlin, Germany
https://career.nuvisan.com/jobs/62099464/Scientist-m-f-d-Computational-Chemistry

Senior Principal Scientist, CADD
Johnson&Johnson
Beerse,Belgium
https://www.linkedin.com/jobs/view/4366766966

Bioinformatician
Healx
Cambridge, UK
https://jobs.lever.co/healx/11b1eff6-f194-4c22-9be5-5f0b46f637cc?lever-via=D8LkrJpH0l&lever-social=job_site

Data Scientist Biologicals Research
Syngenta
Bracknell, UK
https://www.linkedin.com/jobs/view/4366341065

Research Fellow in AI and Computational Chemistry
Leeds University
Leeds, UK
https://jobs.leeds.ac.uk/Vacancy.aspx?ref=EPSCH1127

Application Scientist
Aqemia
Paris, France / London, UK
https://jobs.lever.co/aqemia.com/2676f8f2-bdf0-4530-aaab-63e39d2273f4

Professor for Drug Design and Development
Jena University
Jena, Germany
https://berufungsportal.uni-jena.de/?showProcedure=7B02261D-A2CE-62E2-132A-C3BB0886BD63

CADD Software Developer, Senior Data Scientist, other roles
Chemify
Glasgow, UK
https://www.chemify.io/careers

Computational Drug Designer
Isomorphic Labs
London, UK or Lausanne, Switzerland
https://www.linkedin.com/jobs/view/4311587703

Research Group Leader
EMBL-EBI
Cambridge, UK
https://embl.wd103.myworkdayjobs.com/en-US/EMBL/job/Research-Group-Leader_JR2407

Research Associate on GenAI Applied to Drug Discovery
IRB Barcelona
Barcelona, Spain
https://recruitment.irbbarcelona.org/jobs/6928145-research-associate-on-genai-applied-to-drug-discovery-ref-pd-25-23

PhD Position – Molecular Glue Modelling with AlphaFold3
Queen’s University Belfast
Belfast, UK
https://www.findaphd.com/phds/project/molecular-glue-modelling-with-alphafold3/?p185982

PhD Positions in Computational Life Sciences
UCAM
Murcia, Spain
https://bio-hpc.eu

Cheminformatics…

Video of Cambridge Cheminformatics Meeting on 12 November 2025 is online
https://youtu.be/03E0YSQ_Lxo
…covering causal machine learning, graph neural nets for structure confirmation via NMR, and the unintended consequences of virtual deuteration enumeration in patents

We Still Haven’t Found What We’re Looking For – The Continuing Evolution of Protein-Ligand Co-Folding Methods
https://patwalters.github.io/Cofolding-Evolution
Comment by Pat Walters

Investigating whether deep learning models for co-folding learn the physics of protein-ligand interactions
https://www.nature.com/articles/s41467-025-63947-5
well, not quite it seems

Assessing Boltz-2 Performance for the Binding Classification of Docking Hits
https://pubs.acs.org/doi/10.1021/acs.jcim.5c02630
by Didier Rognan and colleagues

This Week In Cheminformatics
https://thisweekincheminformatics.substack.com
Cheminformatics Newsletter by Manas Mahale

AI Agents in Drug Discovery
https://arxiv.org/pdf/2510.27130
Some use cases as per the title

The OpenADMET – ExpansionRx Blind Challenge has Come to an End
https://openadmet.ghost.io/the-openadmet-expansionrx-blind-challenge-has-come-to-an-end
Overview of the results and learnings

… beyond cheminformatics …

Biotech Unveiled: Understanding the U.S. Biomedical Innovation Marketplace and its Global Role
https://racap.thinkific.com/courses/biotechunveiled
Free course, more general than the title implies

Evaluating Large Language Models in Scientific Discovery
https://arxiv.org/pdf/2512.15567
Finally a more grounded article on the topic

Why you shouldn’t trust data collected on MTurk
https://link.springer.com/article/10.3758/s13428-025-02852-7
Sometimes what shouldn’t be correlated still is

BioAtlas
https://crowd.vivamed.com/bioatlas
‘490+ million rows integrating genetics, expression, perturbations, drugs, and disease into one harmonized, queryable PostgreSQL database’

There is no such thing as a validated prediction model
https://link.springer.com/article/10.1186/s12916-023-02779-w
In the medical context, but applies generally across biology (and beyond)

Hub-and-Spoke Biotechs: Nimbus Therapeutics
https://centuryofbio.com/p/nimbus
Excellent write-up

Atlas Venture Year in Review 2025 – B. Booth
https://www.youtube.com/watch?v=JrNoJe4eNIM
As the title says

China leads research in 90% of crucial technologies — a dramatic shift this century
https://www.nature.com/articles/d41586-025-04048-7
Yes, things change

A Brief History of CHO Cells
https://biomanufacturing.org/uploads/files/547998065159985597-cho-history.pdf

Now What?
https://pni.princeton.edu/sites/g/files/toruqf321/files/documents/John%20Hopfield%20Now%20What%203_0.pdf
What should we do with our lives, what matters? By John ‘Hopfield-Network’ Hopfield

Extracting books from production language models
https://arxiv.org/abs/2601.02671

Related: ‘OpenAI alleged that the ChatGPT did not store specific training data but only statistical knowledge in its parameters and claimed…’
https://www.osborneclarke.com/insights/gema-vs-openai-ai-memorisation-reproduction-relevant-copyright-law-and-tdm-exception-does

Also related: The death of Aaron Swartz
https://www.linkedin.com/posts/ramsesrodriguez_hoy-8-de-noviembre-el-desarrollador-y-hacktivista-activity-7392962060147630080-jQP0

AI as Normal Technology
https://knightcolumbia.org/content/ai-as-normal-technology

… and clearly beyond cheminformatics

‘anyone wanna team up with me to make a company with no viable product and a very pretty website to get money out of VCs’
https://www.reddit.com/r/biotech/comments/1ojhkza/anyone_wanna_team_up_with_me_to_make_a_company
How it really works (kind of)

AI is Destroying the University and Learning Itself
https://www.currentaffairs.org/news/ai-is-destroying-the-university-and-learning-itself

WeWingAnyCar.com
https://www.linkedin.com/posts/olifrost_uk-privatejets-sustainability-ugcPost-7392122275753521152-Zd2i
How to avoid fuel duty… gotta be creative!

The Great AI Earnings Illusion: How Silicon Valley Engineered $170 Billion in Phantom Profits
https://substack.com/inbox/post/178568795
Give it a few years

How The Hell Are You Supposed to Have a Career in Tech in 2026?
https://www.anildash.com/2026/01/05/a-tech-career-in-2026
Not so easy

Buried Talents – How Elites betray their own potential
https://edankrolewicz.substack.com/p/buried-talents

How AI Destroys Institutions
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=5870623

What technology takes from us – and how to take it back
https://www.theguardian.com/news/ng-interactive/2026/jan/29/what-technology-takes-from-us-and-how-to-take-it-back

Music Corner

Pedestrians – I Haven’t
https://tidal.com/track/38839808/u
I Haven’t Got a Manager…

Yaima – Citadella
https://tidal.com/track/236216531/u
The Yaima Music Project is a Cascadian Folktronic Duo…

Federico Aubele – 5
https://tidal.com/album/22652027/u
From Argentina

God is an Astronat – All Is Violent, All Is Bright
https://tidal.com/album/21078300/u
From County Wicklow

Slash – Anastasia
https://tidal.com/track/15273159/u
Pretty much to the point

Bjorn Lynne – Savannah
https://tidal.com/track/27830512/u
Likely I also listened to his music when playing on my Amiga in the late 1990s… quite funny how life is connected when you get older

Bass Corner (this probably became my favourite instrument to listen to recently)

Renaud Garcia-Fons – e.g. Berimbass
https://tidal.com/track/173669622/u

Kham Meslien – Ta confiance
https://tidal.com/track/235270648/u

Madeleine Peyroux – Tango Till They’re Sore
https://tidal.com/track/77657003/u
Also see album, Secular Hymns: https://tidal.com/album/77657001/u

I believe this is all from my side for now – as usual, if you have any information for me to circulate, or wish to present at one of our next Cambridge Cheminformatics Meetings, please just get in touch, cheers!

Best wishes,
Andreas

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